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True on Rei, but it would make sense, as that would be the same age Date would have, if he were still alive.

Chapter 7 http://drmuttonchops.deviantart.com/art/Detective-Conan-Alternate-Bourbon-Arc-Chapter-7-536651585?ga_submit_new=10%253A1433107173

As for Vermouth, I find it extremely unlikely that she would be Elena Miyano. Vermouth tried and probably would have killed Haibara had Ran not intervened in 345, as well as in the Mystery Train with the explosives (unbeknownst to Bourbon). She clearly has a grudge towards the Miyano family in general (for what reason we don't know, but maybe due to their involvement with the "Silver Bullet"). The audio tapes also show that Elena cares for her daughter in demeanor and enough to leave messages behind for her. She's the former actress Sharon/Chris Vineyard. We already know her real identity. We've never seen Elena's eyes, but I'd say they don't look alike (Elena is also British). Rei's former relationship with Elena is unclear. She could be the reason he was brought into the organization. They could be related somehow, or Elena could have taken care of him when he was younger, who knows. Bourbon's plan on the Mystery Train originally could have devised to help Haibara fake her death, which is also a theory. Given we know he is a spy, is there anything "really" tying him down to the organization? (He does seem to have a deep interest in Akai Shuichi though, but that's probably due to Scotch) As for Atsushi, there really isn't much to go on, but didn't Gosho also say that the boss had already appeared in the manga? (I don't think Atsushi has made any appearance in the manga that we know about, not sure if this is relevant at all in the first place) I'm not sure why Akemi would be Rum, it goes against the code-name "policy" that Gosho uses. Rum should definitely be a man. She's also dead, and we know that Rum now is apparently "on the move". She wasn't important enough to the organization to even receive a code-name. I'm not discounting the possibility that Atsushi could be the boss, but I think both of Haibara's parents are dead. I don't really have much of a reason to believe otherwise.